WebHigh-throughput sequencing dramatically changed our view of transcriptome architectures and allowed for ground-breaking discoveries in RNA biology. Recently, sequencing of full … Web14 de jun. de 2024 · reads: All fast5 reads were re-basecalled using guppy (ont-guppy-for-mk1c v4.3.4) in high-accuracy mode (rna_r9.4.1_70bps_hac.cfg, dna_r9.4.1_450bps_hac.cfg) without quality filtering. While standard parameters were used for basecalling fast5s from cDNA sequencing, fast5 files from RNA sequencing were …
Minimap2 transcriptome mapping – Jan
Web16 de jan. de 2024 · ONT甲基化测序流程. 不同于传统的甲基化检测方法,使用ONT平台进行测序前,不需要再对DNA样本进行化学处理,避免了人为因素和化学因素的影响。. 具体 … Web为什么ONT全长转录组测序数据量推荐2G,而二代RNA-seq推荐6G? ONT全长转录组测序一条reads即代表该转录本表达一次,而二代短reads需要非常多条才能覆盖一个转录 … software m808
LIQA: long-read isoform quantification and analysis
Web20 de jan. de 2024 · In recent years, various computational tools have been developed for transcript isoform analysis using long-read RNA-seq data. However, some of these tools were primarily designed or tested on consensus reads (e.g., PacBio CCS reads or ONT R2C2 reads) (14, 17, 21), which have a higher sequencing accuracy compared to raw … Web10 de jan. de 2024 · Of all 499 novel switching isoforms detected exclusively by Ladder-seq, 206 (41.3%) were identified from ONT-cDNA or ONT-RNA long-read data by FLAIR or assembled by StringTie2 or were contained in ... Web9 de fev. de 2024 · Introduction. More than 100 distinct modifications of RNA have been identified, occurring on either the nucleobase or the ribose sugar. These modifications exhibit diverse effects on RNA structure and function, including modulation of stability, translation efficiency, structural dynamics, nuclear export, and translational recoding 1, 2, … software m808 redragon